Package: poolfstat
Authors@R: person(given = "Mathieu",family = "Gautier",role = c("aut", "cre"),email = "mathieu.gautier@inrae.fr")
Version: 3.1.0
License: GPL (>= 2)
Title: Computing f-Statistics and Building Admixture Graphs Based on
        Allele Count or Pool-Seq Read Count Data
Description: Functions for the computation of F-, f- and D-statistics
        (e.g., Fst, hierarchical F-statistics, Patterson's F2, F3, F3*,
        F4 and D parameters) in population genomics studies from allele
        count or Pool-Seq read count data and for the fitting, building
        and visualization of admixture graphs. The package also
        includes several utilities to manipulate Pool-Seq data stored
        in standard format (e.g., such as 'vcf' files or 'rsync' files
        generated by the the 'PoPoolation' software) and perform
        conversion to alternative format (as used in the 'BayPass' and
        'SelEstim' software). As of version 2.0, the package also
        includes utilities to manipulate standard allele count data
        (e.g., stored in 'TreeMix', 'BayPass' and 'SelEstim' format,
        see the Package vignette for details).
LinkingTo: Rcpp, RcppProgress
Imports: Rcpp (>= 1.0.5), methods, data.table, utils, foreach,
        doParallel, parallel, DiagrammeR, ape, stats, Ryacas, Matrix,
        RcppProgress, progress, nnls
Depends: R (>= 3.0)
Encoding: UTF-8
RoxygenNote: 7.3.3
NeedsCompilation: yes
Packaged: 2026-10-05 09:06:31 UTC; root
Author: Mathieu Gautier [aut, cre]
Maintainer: Mathieu Gautier <mathieu.gautier@inrae.fr>
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev libx11-dev
Repository: https://mgautierinra.r-universe.dev
Date/Publication: 2026-02-23 18:30:02 UTC
RemoteUrl: https://github.com/cran/poolfstat
RemoteRef: HEAD
RemoteSha: 47d0fe5e1bc867d27362a5bbd6edddd632d3ea7d