| Title: | Data Only: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests |
|---|---|
| Description: | Contains example data for the 'rehh' package. |
| Authors: | Mathieu Gautier [aut, cre], Alexander Klassmann [aut], Renaud Vitalis [aut] |
| Maintainer: | Mathieu Gautier <[email protected]> |
| License: | GPL (>= 2) |
| Version: | 1.0.1 |
| Built: | 2026-06-04 07:29:42 UTC |
| Source: | https://github.com/cran/rehh.data |
Contains example data for the package rehh.
| Package: | rehh.data |
| Version: | 1.0.0 |
| License: | GPL(>=2) |
Index:
wgscan.cgu Whole genome scan results for the CGU
(Creole from Guadeloupe island)
wgscan.eut Whole genome scan results for a pool of
European taurine cattle
Gautier M., Klassmann A., and Vitalis R. (2017). rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure. Molecular Ecology Resources, 17, 78–90.
Gautier M. and Vitalis R. (2012). rehh: An R package to detect footprints of selection in genome-wide SNP data from haplotype structure. Bioinformatics, 28(8), 1176–1177.
Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. Molecular Ecology, 20, 3128–3143.
A dataframe object with of 44,057 rows (SNPs) and 7 columns: i) chromosome name (CHR), ii) position of the SNP in bp (POSITION), iii) Ancestral allele frequency (freq_A), iv) iHH for the ancestral allele (iHH_A), v) iHH for the derived allele (iHH_D), vi) iES using the estimator by Tang et al. (2007) (iES_Tang_et_al_2007), vii) iES using the estimator by Sabeti et al. (2007) (iES_Sabeti_et_al_2007).
data(wgscan.cgu)data(wgscan.cgu)
Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. Molecular Ecology, 20, 3128–3143.
A dataframe object with 44,057 rows (SNPs) and 7 columns: i) chromosome name (CHR), ii) position of the SNP in bp (POSITION), iii) Ancestral allele frequency (freq_A), iv) iHH for the ancestral allele (iHH_A), v) iHH for the derived allele (iHH_D), vi) iES using the estimator by Tang et al. (2007) (iES_Tang_et_al_2007), vii) iES using the estimator by Sabeti et al. (2007) (iES_Sabeti_et_al_2007).
data(wgscan.eut)data(wgscan.eut)
Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. Molecular Ecology, 20, 3128–3143.